Abou Chakra, M., Stone, J. R. (2008) Descartes, Plateau and Sea Urchins. Design and Nature IV, WIT Transactions on Ecology and the Environment, Vol. 114 pp 97-105, pdf
Abou Chakra, M., Stone, J. R. (2011) Classifying skeleton models to test ideas about growth and form. Paleobiology, 37:686-695, pdf
Abou Chakra, M., Stone, J. R (2011), Holotestoid: A new echinoid test growth model. Journal of Theoretical Biology, 285(1):113-125. doi: 10.1016/j.jtbi.2011.06.019, pdf
http://dx.doi.org/10.1016/j.jtbi.2011.06.019
Abou Chakra, M., Traulsen, A. (2012), Evolutionary dynamics of strategic behavior in a collective-risk dilemma. Plos Computational Biology, 8(8): e1002652, pdf
http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1002652
Hilbe, C., Abou Chakra, M., Altrock, PM., Traulsen, A. (2013) The Evolution of strategic timing in collective-risk dilemmas. Plos ONE 8(6): e66490. doi:10.1371/journal.pone.0066490, pdf
http://www.plosone.org/article/info:doi/10.1371/journal.pone.0066490
Abou Chakra, M., Hall, B. K., Stone, J. R. (2013) Using Taxonomists’ Heads to recapitulate craniate-vertebrate phylogenetic history. Historical Biology doi:10.1080/08912963.2013.825792,
http://www.tandfonline.com/eprint/
Mobley K. B., Abou Chakra, M., Jones A. (2014) No evidence for size-assortative mating in the wild despite mutual mate choice in sex-role-reversed pipefishes. Ecology & Evolution. 4:67-78 doi: 10.1002/ece3.907, pdf
http://onlinelibrary.wiley.com/doi/10.1002/ece3.907/full
Abou Chakra, M., Traulsen, A. (2014), Under high stakes and uncertainty the rich should lend the poor a helping hand. Journal of Theoretical Biology, 341:123-130, pdf
http://dx.doi.org/10.1016/j.jtbi.2013.10.004
Abou Chakra, M., Hilbe C., Traulsen A. (2014), Plastic behaviors in hosts promote the emergence of retaliatory parasites. Scientific Reports, 4:4251, doi:10.1038/srep04251, pdf
http://www.nature.com/srep/2014/140304/srep04251/full/srep04251.html
Abou Chakra, M., Hilbe C. (2015) Modelling the dynamics of crime and punishment: Comment on Statistical physics of crime: A review by M.R. D’Orsogna and M. Perc. Physics of Life Reviews, 12:22-23 doi:10.1016/j.plrev.2015.01.020
Hagel, K. , Abou Chakra, M., Bauer, B., Traulsen, A.,
(2016) Which risk scenarios can drive the emergence of costly
cooperation? Scientific Reports. 6:19269, doi:10.1038/srep19269
http://www.nature.com/articles/srep19269
Haafke, J., Abou Chakra, M., Becks L. (2016) Eco-evolutionary
feedback promotes Red Queen dynamics and selects for sex in
predator populations. Evolution 70-3:641-652 d0i:10.11/evo12885 pdf
http://onlinelibrary.wiley.com/doi/10.1111/evo.12885/abstract
Abou Chakra, M., Hilbe, C., Traulsen, A. (2016) Coevolutionary interactions between Famers and Mafia induce host acceptance of avian brood parasites. Royal Society Open Science, DOI: 10.1098/rsos.160036, pdf
http://rsos.royalsocietypublishing.org/content/3/5/160036
Valier, M., Abou Chakra, M., Hindersin,L., Linnenbrink, M., Traulsen, A., Baines, J. (2017) Evaluating the maintenance of disease-associated variation at the blood group-related gene B4galnt2 in house mice. BMC Evolutionary Biology 17:187 DOI: 10.1186/s12862-017-1035-7 http://rdcu.be/uZif
https://doi.org/10.1186/s12862-017-1035-7
Abou Chakra, M., Lovric, M., Stone, J. R. (2017) Predicting Morphological Disparities in Sea Urchin Skeleton Growth and Form. bioRxiv, doi.org/10.1101/133900 133900
Abou Chakra, M., Bunmann,S., Schenk, H., Oschlies, A., Traulsen, A. (2018) Facing uncertain climate change, immediate action is the best strategy. Nature Comm. 9: 2566 https://doi.org/10.1038/s41467-018-04968-1
Abou Chakra, M., Isserlin, R., Tran, T., Bader, G. D. (2021) Control of tissue development and cell diversity by cell cycle-dependent transcriptional filtering. eLife, 2021;10:e64951 doi 10.7554/elife.65951
(2020) Control of tissue development by cell cycle dependent transcriptional filtering. bioRxiv, doi.org/10.1101/2020.02.25.964650