Mark A. Engelhardt, PhD

Samuel Lunenfeld Research Institute
Toronto, ON, Canada

engelhardt [at] mshri.on.ca

main page


Some extra tips for using the BioX cluster at Stanford.
A collection of files that can be be used to test apbs versus a fairly complex analytical model.
A movie of some base-pair constrained MD trajectories of P5abc.

External Links

APBS
ISIM
**Important comment on ISIM** This site has a useful user's guide, but the version of the code posted on the page does not work with the current implementation of apbs, and has some serious bugs in some operating modes. Please talk to me before you try to start up with ISIM.
VMD
A *great* crib sheet for python 2.4 can be found here.