University of Toronto Kevin Truong's Lab
| UofT | IBBME | ECE | Truong Lab |
| People | Research | Teaching | Publications | Software | Other links |
Publications (and reprints)

Peer-reviewed journal papers

Author(s)
Title
Publication
Li I.T., Shum W. and Truong K.
160-fold acceleration of the Smith-Waterman algorithm using a field programmable gate array (FPGA)
Read article [.pdf, 286 kb]
BMC Bioinformatics. Jun 7;8(1):185. (2007)
Pham E., Chiang J.J., Li I.T., Shum W. and Truong K.
A Computational Tool for Designing FRET Protein Biosensors by Rigid-Body Sampling of Their Conformational Space
Read article [.pdf, 752 kb]
Structure. 15(5), 515-23. (2007)
Li I.T., Ranjith K.R. and Truong K.
Sequence reversed peptide from CaMKK binds to calmodulin in reversible Ca2+-dependent manner.
Read article [.pdf, 437 kb]
Biochem Biophys Res Commun. 352(4):932-5. (2007)
Chiang J.J., Li I.T. and Truong K.
Creation of circularly permutated yellow fluorescent proteins using
fluorescence screening and a tandem fusion template
Read article [.pdf, 256 kb]
Biotechnology Letters 28(7), 471-5. (2006)
Chiang J.J. and Truong K.
Computational modeling of a new fluorescent biosensor for caspase proteolytic activity improves dynamic range
Read article [.pdf, 597 kb]
IEEE Transactions in Nanobioscience 5(1), 41-5. (2006)
Chiang J.J. and Truong K.
Using Co-Cultures Expressing Fluorescence Resonance Energy Transfer Based Protein Biosensors to Simultaneously Image Caspase-3 and Ca2+ Signaling
Read article [.pdf, 452 kb]
Biotechnology Letters 27(16), 1219 - 1227. (2005)
Truong K., Khorchid A. and Ikura M.
Fluorescent cassette-based strategy for engineering of multiple domain fusion proteins.
Read article [.pdf, 682 kb]
BMC Biotechnology 3(1): 8. (2003)
Truong K. and Ikura M.
Domain fusion analysis by applying relational algebra to protein sequence and domain databases.
Read article [.pdf, 446 kb]
BMC Bioinformatics 4(1): 16. (2003)
Stavropoulos D.J., Bradshaw P.S., Li X. Pasic I., Truong K., Ikura M., Ungrin M. and Meyn M.
The Bloom syndrome helicase BLM interacts with TRF2 in ALT cells and promotes telomeric DNA synthesis.
Read article [.pdf, 1495 kb]
Human Molecular Genetics 11, 3135-44. (2002)
Truong K. and Ikura M.
The cadherin superfamily database.
Read article [.pdf, 309 kb]
Journal of Structural and Functional Genomics 2, 135-43. (2002)
Truong K. and Ikura M.
Identification and characterization of subfamily-specific signatures in a large protein superfamily by a hidden Markov model approach.
Read article [.pdf, 846 kb]
BMC Bioinformatics 3(1): 1. (2002)
Truong K., Sawano A., Mizuno H., Hama H., Tong K.I., Mal T.K., Miyawaki A. and Ikura M.
FRET-based in vivo Ca2+ imaging by a new calmodulin-GFP fusion molecule.
Read article [.pdf, 2029 kb]
Nature Structural Biology 8,1069-73. (2001)
Yap K.L., Kim J., Truong K., Sherman M., Yuan T and Ikura M.
Calmodulin target database.
Read article [.pdf, 796 kb]
Journal of Structural and Functional Genomics 1,8-14. (2000)

Peer-reviewed conference papers

Author(s)
Title
Publication
Li, I.T., Chiang J.J., and Truong K.
FRET Evidence that an Isoform of Caspase-7 Binds but Does Not Cleave its Substrate
Read article[.pdf, 720 kb]
28th Annual International IEEE Engineering Conference in Medicine and Biology. (2006)
Chiang J.J., Li, I.T., Pham E. and Truong K.
The FPMOD: A Modeling Tool for Sampling the Conformational Space of Fusion Proteins
Read article [.pdf, 394 kb]
28th Annual International IEEE Engineering Conference in Medicine and Biology. (2006)
Chiang J.J., Studniberg M., Shaw J., Seto S. and Truong K.
Hardware Accelerator for Genomic Sequence Alignment
Read article [.pdf, 303 kb]
28th Annual International IEEE Engineering Conference in Medicine and Biology. (2006)

Reviews and book chapters

Author(s)
Title
Publication
Pham E., Li I.T. and Truong K.
Computational Modeling Approaches for Studying of Synthetic Biological Networks
Read review [.pdf, 335 kb]
Current Bioinformatics. May. 3 (2): 130-141. (2008)
Li I.T., Pham E. and Truong K.
Current approaches for engineering proteins with diverse biological properties
Review
Adv Exp Med Biol. 620 : 18-33 . Review. (2007)
Truong K., Sawano A., Miyawaki A. and Ikura M.
Ca2+ indicators based on calmodulin-fluorescent protein fusions
Read book chapter [.pdf, 1320 kb]
Methods in Molecular Biology. Protein Engineering Protocols. 71-82. (2007)
Li I.T., Pham E. and Truong K.
Protein biosensors based on the principle of fluorescence resonance energy transfer for monitoring cellular dynamics
Read review [.pdf, 284 kb]
Biotechnology Letters. Dec. 28 (24):1971-82. (2006)
Hoeflich K.P., Truong K., Ikura M.
Ca2+ as a second messenger. New reporters for calcium (cameleons and camgaroos)
Book chapter
Cell Biology: A Laboratory Handbook. (2003)
Truong K. and Ikura M.
The use of FRET imaging microscopy to detect protein-protein interactions and protein conformational changes in vivo.
Read review [.pdf, 505 kb]
Current Opinions in Sructural Biology 11,573-8. (2001)
Tepass U., Truong K., Godt D., Ikura M. and Peifer M.
Cadherins in embryonic and neural morphogenesis.
Read review [.pdf, 1614 kb]
Nature Reviews Molecular Cell Biology 1,91-100. (2000)


Copyright 2003-8 Truong Lab, University of Toronto. All Rights Reserved.
Comments regarding this site should be sent to us.